PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13544_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 295aa    MW: 34433.8 Da    PI: 8.6054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13544_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-11145195154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r++h e+Er+RR+++N   + Lr+l+P++   +  + + a+i+  A++++k L
  RrC13544_p2 145 QRMTHIEVERNRRRQMNVHHNSLRSLIPSS---YILRGDQASIVGGAIDFLKIL 195
                  79****************************...9***************99966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-14135206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-8143200No hitNo description
PROSITE profilePS5088813.802144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-11145213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-7150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
DQKVNERRSL QVQVSPEDQS FPLEEDQHST LTLQGTRTPY LLQMLQDPSS VLSFRDPNIL  60
GNYLPYEVPE TYSPIHSETN HFYQNPFLER TNEDISSQEF QINPVGNAHS RRKRRNNNLE  120
TSMSREKRKR RRNKPTKNRE EMESQRMTHI EVERNRRRQM NVHHNSLRSL IPSSYILRGD  180
QASIVGGAID FLKILEQHLQ SLEAQKMTQQ TSKLKIYATV IERHVNLNIQ CQRKRGELLR  240
SIILLEKLGF TVLHLNLTSP CNASVSYSFN LKMEEECNLG TADEITEAVR QIFDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112131KRRNNNLETSMSREKRKRRR
2126131KRKRRR
3127131RKRRR
4127134RKRRRNKP
5145156RMTHIEVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688176.11e-171PREDICTED: transcription factor bHLH70-like
SwissprotO810371e-132BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078IFU71e-167A0A078IFU7_BRANA; BnaA04g26770D protein
TrEMBLM4FHA51e-167M4FHA5_BRARP; Uncharacterized protein
STRINGBra040483.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-129bHLH family protein